If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ), 'gf_id' => 'HOM05D000663', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000663' ), 'data_identifier' => 'HOM05D000663', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000663', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '862', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02020' => 'bna', 'A01p31870' => 'bna', 'A03p00510' => 'bna', 'A03p47940' => 'bna', 'A04p05850' => 'bna', 'A04p21490' => 'bna', 'A07p09280' => 'bna', 'A07p18940' => 'bna', 'A07p21820' => 'bna', 'A08p04000' => 'bna', 'A09p43890' => 'bna', 'A09p46830' => 'bna', 'Aa31LG10G4580' => 'aar', 'Aa31LG10G9210' => 'aar', 'Aa31LG1G22640' => 'aar', 'Aa31LG4G18940' => 'aar', 'Aa31LG5G22530' => 'aar', 'Aa31LG5G7850' => 'aar', 'Aa31LG6G13710' => 'aar', 'Aa31LG8G9700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1400' => 'aag', 'Actinidia02913' => 'ach', 'Actinidia03724' => 'ach', 'Actinidia06770' => 'ach', 'Actinidia12092' => 'ach', 'Actinidia17836' => 'ach', 'Actinidia19141' => 'ach', 'Actinidia26495' => 'ach', 'Actinidia27918' => 'ach', 'Actinidia30990' => 'ach', 'Actinidia37357' => 'ach', 'Ah.01g002960' => 'amhyb', 'Ah.12g060040' => 'amhyb', 'AL1G56370' => 'aly', 'AL1G56560' => 'aly', 'AL3G37830' => 'aly', 'AL4G21660' => 'aly', 'AL4G33570' => 'aly', 'AL4G34340' => 'aly', 'AL5G31040' => 'aly', 'AL6G11280' => 'aly', 'AL7G14040' => 'aly', 'AL8G25240' => 'aly', 'Aqoxy1G00833' => 'aox', 'Aqoxy1G01231' => 'aox', 'Aqoxy2G02347' => 'aox', 'Aqoxy5G00257' => 'aox', 'Aqoxy5G01739' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TF0DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V3RR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XB9B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L03H9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZVI3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC44BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHT50L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYUL7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GUDD2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J43KNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ99AQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8FFLZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LKU4WM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R6Y0SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL69X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3H8PK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XBHS2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF1D9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XTK3T9' => 'arhy', 'AT1G49405' => 'ath', 'AT2G28370' => 'ath', 'AT2G37200' => 'ath', 'AT3G23200' => 'ath', 'AT3G50810' => 'ath', 'AT3G53850' => 'ath', 'AT4G37235' => 'ath', 'AT5G02060' => 'ath', 'ATR0018G001' => 'atr', 'ATR0559G362' => 'atr', 'ATR0680G155' => 'atr', 'ATR0733G022' => 'atr', 'ATR0733G071' => 'atr', 'ATR0748G001' => 'atr', 'ATR1150G001' => 'atr', 'Atru.chr12.319' => 'acertr', 'Atru.chr12.352' => 'acertr', 'Atru.chr3.26' => 'acertr', 'Atru.chr3.3616' => 'acertr', 'Atru.chr3.478' => 'acertr', 'Atru.chr4.2095' => 'acertr', 'Atru.chr5.2908' => 'acertr', 'Atru.chr8.1866' => 'acertr', 'Atru.chr8.2048' => 'acertr', 'Atru.chr8.2056' => 'acertr', 'AUR62002108' => 'cqu', 'AUR62003228' => 'cqu', 'AUR62024967' => 'cqu', 'AUR62024972' => 'cqu', 'AUR62027246' => 'cqu', 'AUR62028225' => 'cqu', 'AUR62028226' => 'cqu', 'AUR62042185' => 'cqu', 'AUR62043958' => 'cqu', 'BcaB01g00232' => 'bca', 'BcaB01g00578' => 'bca', 'BcaB01g06071' => 'bca', 'BcaB01g06072' => 'bca', 'BcaB01g06210' => 'bca', 'BcaB02g07764' => 'bca', 'BcaB02g08504' => 'bca', 'BcaB02g09300' => 'bca', 'BcaB04g17344' => 'bca', 'BcaB04g20465' => 'bca', 'BcaB06g26455' => 'bca', 'BcaB06g28209' => 'bca', 'BcaC02g07544' => 'bca', 'BcaC02g08182' => 'bca', 'BcaC02g09125' => 'bca', 'BcaC02g11841' => 'bca', 'BcaC02g12250' => 'bca', 'BcaC03g15332' => 'bca', 'BcaC03g17636' => 'bca', 'BcaC04g23215' => 'bca', 'BcaC05g26576' => 'bca', 'BcaC06g33079' => 'bca', 'BcaC06g33324' => 'bca', 'BcaC07g37056' => 'bca', 'BcaC07g39544' => 'bca', 'BcaC07g39545' => 'bca', 'BcaC07g39742' => 'bca', 'BcaC08g44649' => 'bca', 'BcaC09g49261' => 'bca', 'BcaNung03517' => 'bca', 'BolC1t00212H' => 'bol', 'BolC1t04034H' => 'bol', 'BolC2t08988H' => 'bol', 'BolC2t11692H' => 'bol', 'BolC3t12641H' => 'bol', 'BolC4t23805H' => 'bol', 'BolC4t25447H' => 'bol', 'BolC4t27273H' => 'bol', 'BolC4t28074H' => 'bol', 'BolC6t37354H' => 'bol', 'BolC7t41930H' => 'bol', 'BolC7t45115H' => 'bol', 'BolC8t47224H' => 'bol', 'BolC8t50216H' => 'bol', 'BolC8t50515H' => 'bol', 'BolC9t53995H' => 'bol', 'BraA01t00190Z' => 'bra', 'BraA01t03313Z' => 'bra', 'BraA03t09442Z' => 'bra', 'BraA03t13903Z' => 'bra', 'BraA04t16282Z' => 'bra', 'BraA04t17715Z' => 'bra', 'BraA04t18320Z' => 'bra', 'BraA07t28727Z' => 'bra', 'BraA07t29599Z' => 'bra', 'BraA07t29864Z' => 'bra', 'BraA08t32428Z' => 'bra', 'BraA09t39849Z' => 'bra', 'BraA09t40144Z' => 'bra', 'C01p02200' => 'bna', 'C01p40760' => 'bna', 'C02p29370' => 'bna', 'C02p56350' => 'bna', 'C03p00780' => 'bna', 'C04p06030' => 'bna', 'C04p23110' => 'bna', 'C04p38700' => 'bna', 'C04p57520' => 'bna', 'C06p21650' => 'bna', 'C07p14340' => 'bna', 'C07p45950' => 'bna', 'C08p04200' => 'bna', 'C08p26000' => 'bna', 'C08p29150' => 'bna', 'C09p10980' => 'bna', 'C09p11030' => 'bna', 'CANSAT01G1081' => 'cansat', 'CANSAT35G1525' => 'cansat', 'CANSAT54G2104' => 'cansat', 'CANSAT56G1597' => 'cansat', 'CANSAT78G0620' => 'cansat', 'CARHR039410' => 'chi', 'CARHR099150' => 'chi', 'CARHR121320' => 'chi', 'CARHR132390' => 'chi', 'CARHR160350' => 'chi', 'CARHR163770' => 'chi', 'CARHR211290' => 'chi', 'CARHR218590' => 'chi', 'CARHR245270' => 'chi', 'Carub.0001s3859' => 'cru', 'Carub.0003s2343' => 'cru', 'Carub.0004s0929' => 'cru', 'Carub.0004s1910' => 'cru', 'Carub.0005s1717' => 'cru', 'Carub.0005s2044' => 'cru', 'Carub.0006s0091' => 'cru', 'Carub.0007s0342' => 'cru', 'Ca_09819_v3' => 'car', 'Ca_19274_v3' => 'car', 'Ca_19275_v3' => 'car', 'Ca_20064_v3' => 'car', 'Ca_29957_v3' => 'car', 'CBR_g41166' => 'cbr', 'Cc01_g11070' => 'ccan', 'Cc02_g07360' => 'ccan', 'Cc02_g18080' => 'ccan', 'Cc03_g05350' => 'ccan', 'Cc06_g02220' => 'ccan', 'Cc06_g03940' => 'ccan', 'Cc07_g05340' => 'ccan', 'CDE01G0293' => 'cde', 'CDE02G1378' => 'cde', 'CDE02G1780' => 'cde', 'CDE04G0392' => 'cde', 'CDE07G1990' => 'cde', 'CDE09G0945' => 'cde', 'Cfa000856' => 'cfa', 'Cfa001647' => 'cfa', 'Cfa004965' => 'cfa', 'Cfa008329' => 'cfa', 'Ciclev10006143m.g' => 'ccl', 'Ciclev10012909m.g' => 'ccl', 'Ciclev10012998m.g' => 'ccl', 'Ciclev10026699m.g' => 'ccl', 'Ciclev10029379m.g' => 'ccl', 'Ciclev10029477m.g' => 'ccl', 'Ciclev10029723m.g' => 'ccl', 'CiPaw.01G029800' => 'cil', 'CiPaw.01G187000' => 'cil', 'CiPaw.01G272600' => 'cil', 'CiPaw.02G013500' => 'cil', 'CiPaw.02G173800' => 'cil', 'CiPaw.05G059600' => 'cil', 'CiPaw.06G138600' => 'cil', 'CiPaw.09G175800' => 'cil', 'CiPaw.09G198200' => 'cil', 'CiPaw.10G148200' => 'cil', 'CiPaw.14G081200' => 'cil', 'CiPaw.14G081300' => 'cil', 'ClCG01G013670' => 'cla', 'ClCG01G016360' => 'cla', 'ClCG02G021190' => 'cla', 'ClCG04G007910' => 'cla', 'ClCG04G009120' => 'cla', 'ClCG05G004390' => 'cla', 'ClCG06G006890' => 'cla', 'ClCG09G017920' => 'cla', 'ClCG11G006620' => 'cla', 'COL.COLO4_14739' => 'col', 'COL.COLO4_17789' => 'col', 'COL.COLO4_18325' => 'col', 'COL.COLO4_22172' => 'col', 'COL.COLO4_27021' => 'col', 'Cpa.g.c27582.2' => 'cpa', 'Cpa.g.sc545.2' => 'cpa', 'CsaV3_2G012910' => 'csa', 'CsaV3_2G014530' => 'csa', 'CsaV3_3G012220' => 'csa', 'CsaV3_4G025280' => 'csa', 'CsaV3_6G001380' => 'csa', 'CsaV3_6G013940' => 'csa', 'CsaV3_6G039640' => 'csa', 'CsaV3_6G042670' => 'csa', 'CSS0002650' => 'camsi', 'CSS0003014' => 'camsi', 'CSS0007728' => 'camsi', 'CSS0013948' => 'camsi', 'CSS0014954' => 'camsi', 'CSS0018451' => 'camsi', 'CSS0019577' => 'camsi', 'CSS0019667' => 'camsi', 'CSS0030934' => 'camsi', 'CSS0033477' => 'camsi', 'CSS0043917' => 'camsi', 'CSS0049815' => 'camsi', 'DCAR_009296' => 'dca', 'DCAR_011741' => 'dca', 'DCAR_015303' => 'dca', 'DCAR_019103' => 'dca', 'DCAR_024054' => 'dca', 'DCAR_024242' => 'dca', 'DCAR_025666' => 'dca', 'DCAR_025667' => 'dca', 'DCAR_028766' => 'dca', 'DCAR_029003' => 'dca', 'Dinv16261' => 'din', 'Dinv23569' => 'din', 'Dinv26781' => 'din', 'Dinv27035' => 'din', 'Dinv31322' => 'din', 'Dinv32737' => 'din', 'Dinv34470' => 'din', 'Dinv35560' => 'din', 'Dinv37134' => 'din', 'Dinv37287' => 'din', 'Dinv42101' => 'din', 'Duzib052G0162' => 'dzi', 'Duzib083G0004' => 'dzi', 'Duzib093G1371' => 'dzi', 'Duzib093G2093' => 'dzi', 'Duzib106G0095' => 'dzi', 'Duzib106G1884' => 'dzi', 'Duzib114G0306' => 'dzi', 'Duzib128G1135' => 'dzi', 'Duzib132G0384' => 'dzi', 'Duzib147G0742' => 'dzi', 'Duzib150G0755' => 'dzi', 'Duzib151G0229' => 'dzi', 'Duzib168G0455' => 'dzi', 'Duzib170G1175' => 'dzi', 'Duzib187G0410' => 'dzi', 'Duzib264G0513' => 'dzi', 'ECA232G4605' => 'eca', 'ECA236G3327' => 'eca', 'ECA238G1731' => 'eca', 'ECA238G3476' => 'eca', 'ECA248G0662' => 'eca', 'EL10Ac3g05032' => 'bvu', 'EL10Ac3g06750' => 'bvu', 'EL10Ac4g08994' => 'bvu', 'EL10Ac5g12679' => 'bvu', 'EL10Ac6g14854' => 'bvu', 'EL10Ac8g19335' => 'bvu', 'EL10Ac8g19336' => 'bvu', 'EL10Ac9g22524' => 'bvu', 'Eucgr.B02710' => 'egr', 'Eucgr.H03094' => 'egr', 'Eucgr.I01232' => 'egr', 'Eucgr.J00926' => 'egr', 'Eucgr.K03250' => 'egr', 'FAN01G2093' => 'fan', 'FAN02G3830' => 'fan', 'FAN02G4509' => 'fan', 'FAN03G3210' => 'fan', 'FAN05G0555' => 'fan', 'FAN06G1872' => 'fan', 'FAN06G2571' => 'fan', 'FAN09G1207' => 'fan', 'FAN09G1788' => 'fan', 'FAN10G1976' => 'fan', 'FAN12G3756' => 'fan', 'FAN14G0523' => 'fan', 'FAN14G3159' => 'fan', 'FAN15G1372' => 'fan', 'FAN16G2729' => 'fan', 'FAN19G1452' => 'fan', 'FAN20G0225' => 'fan', 'FAN21G0881' => 'fan', 'FAN22G0930' => 'fan', 'FAN23G2141' => 'fan', 'FAN25G2852' => 'fan', 'FAN26G1954' => 'fan', 'FvH4_1g14420' => 'fve', 'FvH4_2g07710' => 'fve', 'FvH4_3g32060' => 'fve', 'FvH4_4g03370' => 'fve', 'FvH4_6g13050' => 'fve', 'FvH4_6g15940' => 'fve', 'FvH4_6g21870' => 'fve', 'FvH4_7g23400' => 'fve', 'Glyma.01G102400' => 'gma', 'Glyma.01G180700' => 'gma', 'Glyma.02G061000' => 'gma', 'Glyma.03G067100' => 'gma', 'Glyma.10G007400' => 'gma', 'Glyma.10G187800' => 'gma', 'Glyma.11G061400' => 'gma', 'Glyma.11G122200' => 'gma', 'Glyma.11G145700' => 'gma', 'Glyma.12G047000' => 'gma', 'Glyma.12G075900' => 'gma', 'Glyma.16G143500' => 'gma', 'Glyma.16G155500' => 'gma', 'Glyma.20G088500' => 'gma', 'Glyma.20G203000' => 'gma', 'Gohir.A01G181300' => 'ghi', 'Gohir.A02G038100' => 'ghi', 'Gohir.A04G074001' => 'ghi', 'Gohir.A04G085000' => 'ghi', 'Gohir.A05G103600' => 'ghi', 'Gohir.A08G198500' => 'ghi', 'Gohir.A09G153600' => 'ghi', 'Gohir.A10G094000' => 'ghi', 'Gohir.A10G223150' => 'ghi', 'Gohir.A11G188000' => 'ghi', 'Gohir.A13G025700' => 'ghi', 'Gohir.D01G172400' => 'ghi', 'Gohir.D02G044200' => 'ghi', 'Gohir.D03G135201' => 'ghi', 'Gohir.D04G113100' => 'ghi', 'Gohir.D04G123900' => 'ghi', 'Gohir.D05G103400' => 'ghi', 'Gohir.D05G346200' => 'ghi', 'Gohir.D06G092600' => 'ghi', 'Gohir.D08G215900' => 'ghi', 'Gohir.D09G149300' => 'ghi', 'Gohir.D10G094100' => 'ghi', 'Gohir.D10G235500' => 'ghi', 'Gohir.D11G194500' => 'ghi', 'Gohir.D13G024300' => 'ghi', 'Gorai.002G214000' => 'gra', 'Gorai.003G142300' => 'gra', 'Gorai.004G229500' => 'gra', 'Gorai.005G048900' => 'gra', 'Gorai.006G170500' => 'gra', 'Gorai.007G207900' => 'gra', 'Gorai.009G107600' => 'gra', 'Gorai.009G408600' => 'gra', 'Gorai.009G417500' => 'gra', 'Gorai.010G106900' => 'gra', 'Gorai.010G107000' => 'gra', 'Gorai.011G103200' => 'gra', 'Gorai.011G269200' => 'gra', 'Gorai.012G107000' => 'gra', 'Gorai.013G027400' => 'gra', 'GSVIVG01003767001' => 'vvi', 'GSVIVG01016270001' => 'vvi', 'GSVIVG01016469001' => 'vvi', 'GSVIVG01025194001' => 'vvi', 'GSVIVG01025688001' => 'vvi', 'GSVIVG01027763001' => 'vvi', 'GSVIVG01031895001' => 'vvi', 'GSVIVG01034106001' => 'vvi', 'HanXRQChr01g0019361' => 'han', 'HanXRQChr02g0035551' => 'han', 'HanXRQChr04g0125401' => 'han', 'HanXRQChr07g0201731' => 'han', 'HanXRQChr09g0248971' => 'han', 'HanXRQChr09g0264361' => 'han', 'HanXRQChr10g0312641' => 'han', 'HanXRQChr12g0369511' => 'han', 'HanXRQChr12g0378441' => 'han', 'HanXRQChr12g0380401' => 'han', 'HanXRQChr13g0424761' => 'han', 'HanXRQChr14g0454341' => 'han', 'HanXRQChr16g0506131' => 'han', 'Haze_02437' => 'cav', 'Haze_15160' => 'cav', 'Haze_16890' => 'cav', 'Haze_20848' => 'cav', 'Hma1.2p1_0026F.1_g016340' => 'hma', 'Hma1.2p1_0058F.1_g032450' => 'hma', 'Hma1.2p1_0267F.1_g107470' => 'hma', 'Hma1.2p1_0584F.1_g183360' => 'hma', 'Hma1.2p1_0766F.1_g215160' => 'hma', 'Hma1.2p1_1006F.1_g247070' => 'hma', 'Hma1.2p1_1716F.1_g299075' => 'hma', 'HPP92_006638' => 'vpl', 'HPP92_017782' => 'vpl', 'HPP92_018129' => 'vpl', 'HPP92_020746' => 'vpl', 'Hund00295' => 'sun', 'Hund00302' => 'sun', 'Hund03032' => 'sun', 'Hund10576' => 'sun', 'Hund14122' => 'sun', 'Hund16567' => 'sun', 'Lalb_Chr01g0002881' => 'lal', 'Lalb_Chr01g0010061' => 'lal', 'Lalb_Chr02g0150541' => 'lal', 'Lalb_Chr03g0027411' => 'lal', 'Lalb_Chr05g0227311' => 'lal', 'Lalb_Chr06g0169401' => 'lal', 'Lalb_Chr07g0193011' => 'lal', 'Lalb_Chr16g0378051' => 'lal', 'Lalb_Chr21g0312341' => 'lal', 'Lj2A1026T30' => 'lonja', 'Lj2A112G41' => 'lonja', 'Lj2A89T67' => 'lonja', 'Lj2g0026407' => 'lja', 'Lj3A802T47' => 'lonja', 'Lj3g0009223' => 'lja', 'Lj3g0012298' => 'lja', 'Lj3g0026216' => 'lja', 'Lj4g0026555' => 'lja', 'Lj5A203G55' => 'lonja', 'Lj5g0007001' => 'lja', 'Lj6A662T56' => 'lonja', 'Lj6g0023953' => 'lja', 'Lj7C14G9' => 'lonja', 'Lsat_1_v5_gn_1_64180' => 'lsa', 'Lsat_1_v5_gn_2_109081' => 'lsa', 'Lsat_1_v5_gn_2_117840' => 'lsa', 'Lsat_1_v5_gn_3_93761' => 'lsa', 'Lsat_1_v5_gn_4_179181' => 'lsa', 'Lsat_1_v5_gn_4_90940' => 'lsa', 'Lsat_1_v5_gn_5_65560' => 'lsa', 'Lsat_1_v5_gn_7_88660' => 'lsa', 'Lsat_1_v5_gn_8_14820' => 'lsa', 'Lsat_1_v5_gn_8_18921' => 'lsa', 'Lsat_1_v5_gn_8_85201' => 'lsa', 'Manes.01G049345' => 'mes', 'Manes.03G165800' => 'mes', 'Manes.04G020000' => 'mes', 'Manes.07G120400' => 'mes', 'Manes.08G007400' => 'mes', 'Manes.08G079700' => 'mes', 'Manes.09G068836' => 'mes', 'Manes.10G024900' => 'mes', 'Manes.11G146200' => 'mes', 'Manes.12G097100' => 'mes', 'Manes.13G132800' => 'mes', 'Manes.15G039100' => 'mes', 'Manes.15G146600' => 'mes', 'Manes.17G097800' => 'mes', 'Mapoly0001s0147' => 'mpo', 'MBI05_g28473_MAGBIO' => 'mbi', 'MBI07_g19292_MAGBIO' => 'mbi', 'MBI10_g30297_MAGBIO' => 'mbi', 'MBI14_g09015_MAGBIO' => 'mbi', 'MBI15_g32626_MAGBIO' => 'mbi', 'MBI16_g13166_MAGBIO' => 'mbi', 'MBI16_g38691_MAGBIO' => 'mbi', 'MBI17_g07948_MAGBIO' => 'mbi', 'MD01G1072200' => 'mdo', 'MD01G1140000' => 'mdo', 'MD02G1157700' => 'mdo', 'MD03G1119100' => 'mdo', 'MD04G1136000' => 'mdo', 'MD07G1204300' => 'mdo', 'MD10G1084900' => 'mdo', 'MD10G1278500' => 'mdo', 'MD11G1136900' => 'mdo', 'MD12G1118500' => 'mdo', 'MD13G1212200' => 'mdo', 'MD15G1169000' => 'mdo', 'MD15G1272400' => 'mdo', 'MD16G1215800' => 'mdo', 'Medtr1g043450' => 'mtr', 'Medtr1g073950' => 'mtr', 'Medtr1g074040' => 'mtr', 'Medtr4g021340' => 'mtr', 'Medtr4g058950' => 'mtr', 'Medtr4g068780' => 'mtr', 'Medtr4g113590' => 'mtr', 'Medtr5g018680' => 'mtr', 'Medtr5g033270' => 'mtr', 'Medtr7g078440' => 'mtr', 'Medtr8g078830' => 'mtr', 'MELO3C003154.2' => 'cme', 'MELO3C004889.2' => 'cme', 'MELO3C006436.2' => 'cme', 'MELO3C007506.2' => 'cme', 'MELO3C008242.2' => 'cme', 'MELO3C014231.2' => 'cme', 'MELO3C021960.2' => 'cme', 'MELO3C022979.2' => 'cme', 'MELO3C025775.2' => 'cme', 'Migut.F00742' => 'egut', 'Migut.G00472' => 'egut', 'Migut.H00508' => 'egut', 'Migut.J00296' => 'egut', 'Migut.J00533' => 'egut', 'Migut.K00844' => 'egut', 'Migut.N02595' => 'egut', 'MSTRG.12317' => 'ama', 'MSTRG.17796' => 'ama', 'MSTRG.19066' => 'ama', 'MSTRG.19164' => 'ama', 'MSTRG.23809' => 'ama', 'MSTRG.26865' => 'ama', 'MSTRG.27362' => 'ama', 'MSTRG.2925' => 'ama', 'MSTRG.5384' => 'ama', 'Nitab4.5_0000090g0110' => 'nta', 'Nitab4.5_0000108g0120' => 'nta', 'Nitab4.5_0000119g0440' => 'nta', 'Nitab4.5_0000342g0040' => 'nta', 'Nitab4.5_0000754g0190' => 'nta', 'Nitab4.5_0000987g0090' => 'nta', 'Nitab4.5_0003098g0050' => 'nta', 'Nitab4.5_0003131g0020' => 'nta', 'Nitab4.5_0003281g0030' => 'nta', 'Nitab4.5_0003362g0040' => 'nta', 'Nitab4.5_0003580g0060' => 'nta', 'Nitab4.5_0003816g0130' => 'nta', 'Nitab4.5_0003897g0040' => 'nta', 'Nitab4.5_0004624g0060' => 'nta', 'Nitab4.5_0004744g0020' => 'nta', 'Nitab4.5_0005309g0030' => 'nta', 'Nitab4.5_0009967g0040' => 'nta', 'Nitab4.5_0011556g0010' => 'nta', 'Nn1g02718' => 'nnu', 'Nn2g10807' => 'nnu', 'Nn2g11245' => 'nnu', 'Nn2g13106' => 'nnu', 'Nn2g13488' => 'nnu', 'Nn5g29448' => 'nnu', 'Nn6g32179' => 'nnu', 'Oeu001356.1' => 'oeu', 'Oeu001517.1' => 'oeu', 'Oeu011125.1' => 'oeu', 'Oeu011994.1' => 'oeu', 'Oeu013463.1' => 'oeu', 'Oeu028949.2' => 'oeu', 'Oeu030191.1' => 'oeu', 'Oeu032912.1' => 'oeu', 'Oeu034078.2' => 'oeu', 'Oeu043826.1' => 'oeu', 'Oeu053768.1' => 'oeu', 'Oeu056310.2' => 'oeu', 'Oeu059729.1' => 'oeu', 'Oeu063891.1' => 'oeu', 'Os01g0847300' => 'osa', 'Os03g0206600' => 'osa', 'Os03g0767900' => 'osa', 'Os05g0456500' => 'osa', 'Os09g0249400' => 'osa', 'Os10g0343200' => 'osa', 'Peaxi162Scf00016g01134' => 'pax', 'Peaxi162Scf00024g02318' => 'pax', 'Peaxi162Scf00164g01415' => 'pax', 'Peaxi162Scf00270g00417' => 'pax', 'Peaxi162Scf00330g01217' => 'pax', 'Peaxi162Scf00488g00815' => 'pax', 'Peaxi162Scf00535g00527' => 'pax', 'Peaxi162Scf00584g00013' => 'pax', 'Peaxi162Scf00658g00041' => 'pax', 'Peaxi162Scf00684g00560' => 'pax', 'PGR004G0556' => 'pgr', 'PGR004G1662' => 'pgr', 'PGR031G0443' => 'pgr', 'PGR042G1246' => 'pgr', 'PGR083G1181' => 'pgr', 'PGR083G1785' => 'pgr', 'PGR083G2881' => 'pgr', 'PGR119G1301' => 'pgr', 'PGR142G4287' => 'pgr', 'PGSC0003DMG400002781' => 'stu', 'PGSC0003DMG400008080' => 'stu', 'PGSC0003DMG400010037' => 'stu', 'PGSC0003DMG400017235' => 'stu', 'PGSC0003DMG400017586' => 'stu', 'PGSC0003DMG400019144' => 'stu', 'PGSC0003DMG400027136' => 'stu', 'PGSC0003DMG401008816' => 'stu', 'Phvul.003G249900' => 'pvu', 'Phvul.004G083400' => 'pvu', 'Phvul.007G128700' => 'pvu', 'Phvul.007G272500' => 'pvu', 'Phvul.010G016500' => 'pvu', 'Phvul.011G049100' => 'pvu', 'Potri.004G149332' => 'ptr', 'Potri.004G211400' => 'ptr', 'Potri.006G090400' => 'ptr', 'Potri.007G033600' => 'ptr', 'Potri.008G165500' => 'ptr', 'Potri.009G014600' => 'ptr', 'Potri.009G110200' => 'ptr', 'Potri.010G073000' => 'ptr', 'Potri.010G198700' => 'ptr', 'Potri.016G090100' => 'ptr', 'Pp3c16_4800' => 'ppa', 'Pp3c27_6290' => 'ppa', 'Pp3c5_5108' => 'ppa', 'Pp3c6_20660' => 'ppa', 'Prupe.1G037100' => 'ppe', 'Prupe.1G185300' => 'ppe', 'Prupe.2G213400' => 'ppe', 'Prupe.2G240600' => 'ppe', 'Prupe.6G102400' => 'ppe', 'Prupe.6G236400' => 'ppe', 'Prupe.6G261300' => 'ppe', 'Prupe.7G146000' => 'ppe', 'Prupe.8G107800' => 'ppe', 'Psat2g163560' => 'psa', 'Psat4g089920' => 'psa', 'Psat6g133160' => 'psa', 'Psat6g137560' => 'psa', 'Psat7g206120' => 'psa', 'Psat7g225400' => 'psa', 'Psat7g237680' => 'psa', 'PSO063G7132' => 'pso', 'PSO170G2038' => 'pso', 'PSO210G7103' => 'pso', 'PSO339G1075' => 'pso', 'PSO339G1284' => 'pso', 'PSO339G2365' => 'pso', 'PSO339G3720' => 'pso', 'PSO380G0002' => 'pso', 'PSO384G0807' => 'pso', 'PSO384G1188' => 'pso', 'PSO423G0193' => 'pso', 'PSO513G0002' => 'pso', 'PSO541G5941' => 'pso', 'PSO596G0029' => 'pso', 'PSO596G0039' => 'pso', 'PSO675G7740' => 'pso', 'PSO675G8220' => 'pso', 'PSO700G0388' => 'pso', 'PSO832G3583' => 'pso', 'QL01p022019' => 'qlo', 'QL06p044322' => 'qlo', 'QL07p028923' => 'qlo', 'QL07p029609' => 'qlo', 'QL08p055774' => 'qlo', 'QL11p039606' => 'qlo', 'RcHm_v2.0_Chr1g0368521' => 'rch', 'RcHm_v2.0_Chr2g0103141' => 'rch', 'RcHm_v2.0_Chr3g0465321' => 'rch', 'RcHm_v2.0_Chr3g0469641' => 'rch', 'RcHm_v2.0_Chr4g0392361' => 'rch', 'RcHm_v2.0_Chr5g0058781' => 'rch', 'RcHm_v2.0_Chr6g0262031' => 'rch', 'Rhsim02G0035900' => 'rsi', 'Rhsim03G0136500' => 'rsi', 'Rhsim05G0078000' => 'rsi', 'Rhsim05G0198300' => 'rsi', 'Rhsim08G0109900' => 'rsi', 'Sabra04G0142900' => 'sbr', 'Sabra07G0029300' => 'sbr', 'Sabra08G0126000' => 'sbr', 'Sabra09G0007400' => 'sbr', 'Sabra09G0084200' => 'sbr', 'Sabra10G0035300' => 'sbr', 'Sabra10G0153000' => 'sbr', 'Sabra16G0095700' => 'sbr', 'Sabra16G0102300' => 'sbr', 'SalBow1G5966' => 'sbo', 'SalBow3G0198' => 'sbo', 'SalBow3G2246' => 'sbo', 'SalBow3G4226' => 'sbo', 'SalBow5G4629' => 'sbo', 'SalBow5G5228' => 'sbo', 'SalBow6G6693' => 'sbo', 'SalBow6G7207' => 'sbo', 'SalBow8G3472' => 'sbo', 'Sc03g0001120' => 'sci', 'Sc09g0006290' => 'sci', 'Sc13g0005220' => 'sci', 'Sc13g0005980' => 'sci', 'Sc15g0001470' => 'sci', 'Sc16g0001230' => 'sci', 'Sc22g0004400' => 'sci', 'Sed0002810' => 'sed', 'Sed0004271' => 'sed', 'Sed0008763' => 'sed', 'Sed0013865' => 'sed', 'Sed0016398' => 'sed', 'Sed0018227' => 'sed', 'Sed0019769' => 'sed', 'Sed0023258' => 'sed', 'Sed0024133' => 'sed', 'Sed0025796' => 'sed', 'SEGI_10987' => 'sgi', 'SEGI_16651' => 'sgi', 'SEGI_31259' => 'sgi', 'SEGI_36751' => 'sgi', 'SGA_v2.0_scaffold15G07194' => 'sas', 'SGA_v2.0_scaffold2G01049' => 'sas', 'SGA_v2.0_scaffold40G15541' => 'sas', 'SGA_v2.0_scaffold55G19815' => 'sas', 'SGA_v2.0_scaffold75G24856' => 'sas', 'SGA_v2.0_scaffold80G25768' => 'sas', 'SGA_v2.0_scaffold85G26828' => 'sas', 'SHI12716' => 'shi', 'SHI23750' => 'shi', 'SMO134G0035' => 'smo', 'SMO364G0409' => 'smo', 'SMO367G1190' => 'smo', 'Solyc02g065420.3' => 'sly', 'Solyc02g090000.3' => 'sly', 'Solyc05g052940.3' => 'sly', 'Solyc09g011223.1' => 'sly', 'Solyc09g089850.3' => 'sly', 'Solyc10g086120.2' => 'sly', 'Solyc11g069480.2' => 'sly', 'Sopen02g015620' => 'spe', 'Sopen02g034690' => 'spe', 'Sopen05g012220' => 'spe', 'Sopen05g031460' => 'spe', 'Sopen09g005980' => 'spe', 'Sopen09g032790' => 'spe', 'Sopen10g035490' => 'spe', 'Sp1g36250' => 'spa', 'Sp3g20850' => 'spa', 'Sp4g11170' => 'spa', 'Sp4g19520' => 'spa', 'Sp5g08530' => 'spa', 'Sp5g11410' => 'spa', 'Sp6g40370' => 'spa', 'Sp7g34550' => 'spa', 'TAR365G0082' => 'tar', 'TAR369G1067' => 'tar', 'TAR381G1418' => 'tar', 'TAR623G0181' => 'tar', 'TAR623G0532' => 'tar', 'TAR628G0318' => 'tar', 'TAR633G2263' => 'tar', 'TAR636G0104' => 'tar', 'TAR636G0531' => 'tar', 'TAR636G2509' => 'tar', 'TAR636G3249' => 'tar', 'THA.LOC104806549' => 'tha', 'THA.LOC104807565' => 'tha', 'THA.LOC104807996' => 'tha', 'THA.LOC104808451' => 'tha', 'THA.LOC104808616' => 'tha', 'THA.LOC104815746' => 'tha', 'THA.LOC104816248' => 'tha', 'THA.LOC104821284' => 'tha', 'THA.LOC104823446' => 'tha', 'THA.LOC104826367' => 'tha', 'THA.LOC104826708' => 'tha', 'Thecc.01G045200' => 'tca', 'Thecc.02G030200' => 'tca', 'Thecc.04G252900' => 'tca', 'Thecc.05G032800' => 'tca', 'Thecc.05G060900' => 'tca', 'Thecc.09G341700' => 'tca', 'Thecc.10G034900' => 'tca', 'Thhalv10010789m.g' => 'esa', 'Thhalv10010793m.g' => 'esa', 'Thhalv10011847m.g' => 'esa', 'Thhalv10014817m.g' => 'esa', 'Thhalv10017298m.g' => 'esa', 'Thhalv10017309m.g' => 'esa', 'Thhalv10021696m.g' => 'esa', 'Thhalv10026476m.g' => 'esa', 'TPR.G11246' => 'tpr', 'TPR.G15550' => 'tpr', 'TPR.G15857' => 'tpr', 'TPR.G18931' => 'tpr', 'TPR.G29854' => 'tpr', 'TPR.G29892' => 'tpr', 'TPR.G5576' => 'tpr', 'TWI09G0825' => 'twi', 'TWI15G0345' => 'twi', 'TWI53G0633' => 'twi', 'TWI53G2078' => 'twi', 'TWI74G0605' => 'twi', 'TWI75G0279' => 'twi', 'TWI77G0793' => 'twi', 'TWI79G1110' => 'twi', 'TWI79G1154' => 'twi', 'unitig_0.g1027' => 'ugi', 'unitig_27.g25058' => 'ugi', 'unitig_61.g26165' => 'ugi', 'unitig_699.g19194' => 'ugi', 'unitig_749.g14181' => 'ugi', 'unitig_899.g15142' => 'ugi', 'vmacro11367' => 'vma', 'vmacro14433' => 'vma', 'vmacro15428' => 'vma', 'vmacro17877' => 'vma', 'vmacro19446' => 'vma', 'vmacro20185' => 'vma', 'vmacro23388' => 'vma', 'VMungo0251G3720' => 'vmu', 'VMungo0331G0803' => 'vmu', 'VMungo0464G1522' => 'vmu', 'VMungo0720G3079' => 'vmu', 'VMungo0720G3124' => 'vmu', 'VMungo1127G0178' => 'vmu', 'Zm00001eb007310' => 'zma', 'Zm00001eb058720' => 'zma', 'Zm00001eb148020' => 'zma', 'Zm00001eb224040' => 'zma', 'Zm00001eb308530' => 'zma', 'Zm00001eb347640' => 'zma' ) $gf_id = 'HOM05D000663' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000663' ) $data_identifier = 'HOM05D000663' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 8, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 9, 'bca' => (int) 30, 'bol' => (int) 16, 'bra' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 12, 'cla' => (int) 9, 'col' => (int) 5, 'cpa' => (int) 2, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 14, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 11, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 9, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 19, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 11, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb347640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1